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kevinkovalchik / RawTools

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
Apache License 2.0
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How to run label-free quant? I guess its -u the parameter, but the results are not including right ions #67

Closed CandyClass closed 2 years ago

CandyClass commented 2 years ago

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chrishuges commented 2 years ago

Can you please provide some more details? It is indeed the -u flag, but what do you mean it is not including the right ions? Can you provide an example?

chrishuges commented 2 years ago

Closed due to lack of response. Will re-open if desired.