khuang28jhu bs3 issues - Githubissues

khuang28jhu / bs3

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

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issues

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Reference Index fails

#39 desmodus1984 opened 7 months ago
0
Unable to align .fq file // Minimum RAM necessary to align reads to human genome

#38 eb-97 opened 1 year ago
0
Error index

#37 lab23UGD opened 1 year ago
2
0.00% Aligned

#36 nmc-ei opened 3 years ago
0
ERROR: Cannot file program ./snap for execution.

#35 frylhc closed 3 years ago
0
find multiple hit region

#34 jeongmeani opened 4 years ago
0
sched_setaffinity: Invalid argument

#33 keroguynes closed 1 year ago
1
BigAllocator: allocating too much memory

#32 Ckhyriem opened 4 years ago
2
bs3-build error - std::bad_alloc ??

#31 ghost opened 4 years ago
1
index problem

#30 fanghe0720 opened 4 years ago
0
"[Error] Cannot open input file : %s" % read_file

#29 sunta3iouxos opened 4 years ago
1
Samtools-htslib-API: bam_index_build2() not yet implemented and no index available for pileup

#28 Dongdong-Chen opened 5 years ago
0
python: can't open file 'bs_align/bs_single_end3.py': [Errno 2] No such file or directory

#27 Dongdong-Chen opened 5 years ago
0
Use `snap`, not `./snap` to use system installation

#26 enormandeau opened 5 years ago
0
Use `snap`, not `./snap` to use system installation

#25 enormandeau opened 5 years ago
0
Is bs3 suitable for PBAT library?

#24 zorrodong opened 5 years ago
0
TabError: inconsistent use of tabs and spaces in indentation

#23 joseemayo opened 5 years ago
1
ERROR: Cannot file program ./snap for execution.

#22 rahulnutron closed 5 years ago
1
python3

#21 antonkulaga opened 5 years ago
1
bs3-call_methylation gave no results

#20 k1197445 opened 5 years ago
2
Plz optimize details such as directories

#19 PhrenoVermouth opened 5 years ago
0
Add SAM/BAM input as alternative to fastq

#18 okartal opened 5 years ago
0
Error in Sam file

#17 demis001 opened 5 years ago
0
Memory issue

#16 demis001 opened 5 years ago
1
SNAP version

#15 ktang opened 5 years ago
1
fix typo for Matplotlib

#14 ktang opened 5 years ago
0
Can not find the index file in "./reference_genome/Sscrofa11.fa_snap/W_G2A and W_C2T"

#13 xiaoxiaolongyuan opened 5 years ago
4
bs3 killed and no output

#12 AdrianS85 opened 5 years ago
1
bs_align error

#11 lyd0527 opened 6 years ago
0
Empty sam file

#10 mrb20045 opened 6 years ago
11
Large FASTQ's in-core, can exhaust large system RAM

#9 dakami opened 6 years ago
1
alignment file is empty and no mapping

#8 sbaheti opened 6 years ago
4
syntax issue with bs3-build

#7 sbaheti closed 6 years ago
0
How to set the number of threads

#6 SchulzLab opened 6 years ago
2
bs3-align printing version only

#5 nsmackler opened 6 years ago
7
bs3-build cannot be run after adding folder to PATH

#4 SchulzLab opened 6 years ago
1
Sam file is empty afertern aligned reads?

#3 ChengYunazhi opened 6 years ago
5
got a problem about bs-seeker3

#2 feihongloveworld closed 6 years ago
2
bs3-align was not running but no error appeared either

#1 yupenghe closed 6 years ago
2