kingsfordgroup sailfish issues

kingsfordgroup / sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads

http://www.cs.cmu.edu/~ckingsf/software/sailfish

GNU General Public License v3.0

124 stars 45 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Binary version doesn't exist

#120 MiladAD123NGS opened 1 year ago
0
Cannot find source file: ... external/install/src/rapmap/RapMapFileSystem.cpp

#119 yurivict opened 2 years ago
1
No <install_dir>/bin folder after installation

#118 GimenaA opened 2 years ago
0
A bug: fail in 'make' step

#117 huangwb8 opened 3 years ago
1
PARSE ERROR: Argument: -k (--klen) Couldn't read argument value from string

#116 Rashedul opened 3 years ago
0
Errors while running CTest

#115 liuwenzeng opened 4 years ago
0
error during make (fatal error: spdlog/fmt/ostr.h: No such file or directory)

#114 taehyong opened 5 years ago
0
Sailfish fails to build because of name conflict with CHAR_WIDTH from limits.h

#113 SethosII opened 5 years ago
1
Failure in creating an index

#112 LucilaT closed 5 years ago
1
simple_test fails -- Couldn't read argument value from string 'sample_index'

#111 kellmnop closed 5 years ago
16
update jellyfish to 2.2.10

#110 Millak opened 5 years ago
0
installation error; undefined reference to symbol

#109 cjieming opened 6 years ago
1
Installation erors

#108 tkzeng closed 6 years ago
0
error: wrong number of template arguments

#107 studident opened 6 years ago
14
Error: base operand of '->'is not a pointer

#106 studident opened 6 years ago
0
Fatal error: spdlog/fmt/ostr.h

#105 studident opened 6 years ago
0
quant_bias_corrected.sf is not returned

#104 arfesta opened 6 years ago
0
Can not index

#103 tuan-tt opened 6 years ago
2
build fail @step 'libtbb'

#102 subwaystation opened 7 years ago
2
build fail - can't find libstdc++

#101 Gracklewolf opened 7 years ago
1
github code doesn't match up with 0.10.0 binary

#100 roryk opened 7 years ago
0
running the tests

#99 ink1 opened 7 years ago
0
sailfish index -t does not take multiple transcript fasta file

#98 jeremywzh opened 8 years ago
1
Deterministic output (Sailfish 0.7.6_Linux-x86-64)

#97 martinloewer closed 8 years ago
2
Not getting multiple columns with multiple fastq files

#96 upendrak closed 8 years ago
7
Make fails (Debian Wheezy)

#95 scienceforever opened 8 years ago
1
PPC64le: Make fails on Jellyfish. Need --without-sse

#94 jlost opened 8 years ago
3
Fix missing includes

#93 sjackman closed 8 years ago
2
No type named std::iota and std::random_device

#92 sjackman closed 8 years ago
9
libboost 1.57

#91 lfaller opened 8 years ago
7
Sailfish-Paired end single replicate study

#90 misrak closed 8 years ago
2
cannot compile sailfish-0.2.7

#89 antonvila closed 8 years ago
5
Indexing fails

#88 aminzia closed 8 years ago
7
Seq bias correct

#87 rob-p closed 8 years ago
0
Create Dummy_File

#86 ayushsengupta1991 closed 8 years ago
0
Fix wrong link to documentation.

#85 nsoranzo closed 8 years ago
1
Library depth with alignment-free methods

#84 roryk closed 8 years ago
3
Improve error messages

#83 bgruening closed 8 years ago
1
index broken

#82 butterflyology closed 8 years ago
3
Sailfish 0.7.0 build errors under OSX

#81 roryk closed 8 years ago
7
Make fetching all dependencies optional like boost

#80 flying-sheep opened 9 years ago
18
Error with Sailfish version Sailfish-0.6.3-Linux_x86-64 while running the index on NCBI_spiked in transcriptome

#79 vd4mmind closed 9 years ago
11
Fix typo.

#78 ctb closed 8 years ago
1
Add a Gitter chat badge to README.md

#77 gitter-badger closed 9 years ago
0
Provide option to skip update check

#76 jdidion closed 9 years ago
2
salmon index crashes with cryptic error

#75 jdidion closed 8 years ago
2
salmon 0.3.0: error: no member named 'all_of' in namespace 'std'

#74 sjackman closed 8 years ago
7
static link libstdc++ if not on osx

#73 blahah closed 9 years ago
1
Salmon 0.2.7 - Segmentation Fault

#72 aconz2 closed 9 years ago
2
New Sailfish release to fix linking error

#71 LeeMendelowitz closed 8 years ago
1