Automatic allele defining for pseudogenes

kjolley / BIGSdb

Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.

https://pubmlst.org/software/bigsdb/

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Automatic allele defining for pseudogenes #126

Closed kjolley closed 9 years ago

kjolley commented 9 years ago

Currently there is an option to define complete coding sequences, i.e. terminal start and stop codons with no internal stop codons. It could be useful to be able to have an option to define based on start/stop codons without worrying about internal stop codons when trying to automate curation of pseudogenes.

Reported by: kjolley

kjolley commented 9 years ago

Milestone: 1.11 --> 1.12

Original comment by: kjolley