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klebgenomics
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Kleborate
GNU General Public License v3.0
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mash install issues
#90
kapsakcj
opened
3 weeks ago
1
Update klebsiella_pneumo_complex__kaptive.py
#89
tomdstanton
closed
1 month ago
0
No module named 'kaptive.misc'
#88
erinyoung
closed
1 month ago
2
Very long headers in the FASTA are not parsed correctly
#87
CorinYeatsCGPS
opened
1 month ago
2
Blank lines in FASTAs
#86
CorinYeatsCGPS
closed
1 month ago
1
tabs in fasta headers
#85
katholt
closed
1 month ago
1
Couple of issues
#84
samlipworth
closed
1 month ago
1
replace with modular codebase
#83
Marysteph
closed
2 months ago
0
replace with modular codebase
#82
Marysteph
closed
2 months ago
0
adding SHV-238
#81
katholt
closed
2 months ago
0
makeblastdb died with a Signals.SIGBUS: 7 error
#80
taffners
opened
5 months ago
0
Add setuptools to requirements (Fix #78)
#79
samuell
closed
2 months ago
0
No module named 'distutils'
#78
samuell
closed
2 months ago
0
Confusion in the ID of SHV
#77
ghost
closed
2 months ago
3
updated allele databases
#76
Marysteph
closed
7 months ago
0
Kaptive not found
#75
hkaspersen
closed
1 month ago
1
rmpA and rmpA2 alleles
#74
valery-shap
closed
10 months ago
7
test_shv_09 failure with version 2.4.0 on Debian sid
#73
emollier
closed
10 months ago
2
Shvmod
#72
katholt
closed
11 months ago
0
could not find makeblastdb
#71
revaoleg
closed
10 months ago
2
Request: Default to 1 CPU thread
#70
schorlton
opened
1 year ago
0
Assertion error when trying to run with --resistance
#69
lknegendorf
opened
1 year ago
0
`kleborate --version` reports v2.2.0, expect 2.3.1
#68
kapsakcj
closed
1 year ago
2
unit tests fail with v2.3.0
#67
kapsakcj
closed
1 year ago
2
Kleborate Tutorial contains wrong description about incomplete matches
#66
ealdraed
opened
1 year ago
0
Adding an installation guide
#65
PiresAllanSilva
closed
2 months ago
2
FASTA parser issue
#64
cgps-admin
opened
2 years ago
1
Switch blast execution from os to subprocess
#63
lknegendorf
opened
2 years ago
0
error occurring for some FASTA files
#62
karubiotools
opened
2 years ago
2
What's the meaning of 0% ？
#61
xuechunxu
opened
2 years ago
0
Error_cloning_and_runing_kleborate
#60
MariaPerezVazquez
opened
2 years ago
0
Add --kaptive_path to specify path to kaptive data
#59
rpetit3
closed
2 months ago
0
Specify kaptive dataset path at runtime
#58
rpetit3
closed
1 month ago
0
kleborate is failing tests on s390x
#57
nileshpatra
opened
3 years ago
0
Error: mdb_dbi_open: MDB_NOTFOUND: No matching key/data pair found
#56
HumbiFred
closed
3 years ago
1
Error: could not find Kaptive directory. Did you git clone with --recursive?
#55
yzhzu
closed
1 month ago
0
update Rmp column to flag when a gene in the locus is truncated
#54
katholt
opened
3 years ago
0
make AMR reporting compatible with hAMRonization
#53
katholt
opened
3 years ago
0
improve handling of intrinsic alleles of fosA, oqxAB
#52
katholt
opened
3 years ago
0
K and O loci identification
#51
AntonS-bio
closed
3 years ago
1
Errors
#50
githubzhw2018
opened
4 years ago
0
kaptive.py :: popen uses potentialy wrong python3
#49
EricDeveaud
closed
4 years ago
1
use same interpreter than the one running
#48
EricDeveaud
closed
4 years ago
1
Broken link for preparing resistance gene database files.
#47
marjorie2205
closed
4 years ago
1
BiopythonDeprecationWarning error when running Kleborate.
#46
marjorie2205
closed
4 years ago
2
error when running kleborate: 'module' object has no attribute 'TemporaryDirectory'
#45
ramiroricardo
closed
4 years ago
3
Biophyton_problem
#44
MariaPerezVazquez
closed
4 years ago
3
Bio.Alphabet
#43
mushalallam
closed
4 years ago
1
address Bio.Alphabet removal in Biopython 1.78
#42
emollier
opened
4 years ago
0
mcr-8 and tmexCD1-toprJ1
#41
sunctx
closed
4 years ago
0
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