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knights-lab / BugBase

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Suggestion : Detailed log #3

Open michoug opened 6 years ago

michoug commented 6 years ago

Hi, I was using the software and at some point, I got this warning :

[1] "Plotting OTU contributions..."
[1] "Some OTUs did not have a taxonomy associated. Did you pick against Greengenes 97% or IMG?"
[1] "BugBase analysis complete"

But it doesn't tell me which OTUs are problematic so I don't know if the mistake is due to an issue in the annotation or another error. Best Greg

TonyaWard commented 6 years ago

Hi Greg,

If you picked OTUs using a closed reference approach with either GreenGenes 97% ID references or the IMG database (shotgun only), you should be fine. We will work on updating BugBase to tell you how many OTUs didn't have associated taxonomy.

Thanks for using BugBase!