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koadman / graphdeconvolution

deconvolution of species & strain genome mixtures in assembly graphs
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reads for a tiny test dataset #1

Open koadman opened 7 years ago

koadman commented 7 years ago

Now that something resembling an end-to-end pipeline is implemented it would be helpful to have a small test set for a usage example. @chrisquince would you be willing to push the read set behind the 3 gene x 5 strain data we were using during the hackathon?

chrisquince commented 7 years ago

Hi Aaron, I will do this but I want to add a poly A tail to the sequence first so that we can assemble the whole real sequence. Will get started with that. Shall I make this one noisier?

koadman commented 7 years ago

Thanks Chris, not sure about the noise -- the advantage of the dataset we used at the hackathon is that it will be easier to know when the complete pipeline is reproducing the results we achieved at the hackathon. I have no idea what noise and poly-A tails will do to it, though it would be fun to explore!