kr-colab diploSHIC issues

kr-colab / diploSHIC

feature-based deep learning for the identification of selective sweeps

MIT License

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issues

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Could diploS/HIC detect background selection?

#57 jiangzy26 opened 1 month ago
1
a few changes here to get compatible with tf 2.15

#56 andrewkern closed 1 month ago
0
Incompatibility with Keras 3

#55 mufernando closed 1 month ago
3
Break up actions

#54 bruce-edelman closed 1 month ago
0
Fix misc.py import for confusion matrix plot

#53 bruce-edelman closed 7 months ago
8
Error printing out confusion matrix

#52 MattHartfield closed 7 months ago
2
WIP: Adding Domain adaptation

#51 bruce-edelman opened 1 year ago
3
Query Regarding Parameters in Coalescent Simulation Step of diploS/HIC

#50 yunhanajing opened 1 year ago
0
ValueError cannot reshape array of size 150000 into shape (1000,13,11)

#49 vkhanna7 closed 1 month ago
1
"-Pa" parameters question

#48 pengyan19 closed 1 year ago
1
Error using pip install

#47 mariharris closed 1 month ago
11
edge case where segment is completely masked

#46 andrewkern closed 1 year ago
0
Suggestion to the Soup-to-nuts wiki example

#45 ChristinaLK opened 1 year ago
0
Error installing on Condor

#44 vkhanna7 closed 1 year ago
1
Installation in Windows

#43 vkhanna7 closed 1 year ago
1
diploSHIC detects too many soft / softlinked regions in the genome

#42 melop opened 2 years ago
16
different number of 'layers' between train dataeset and observed datased

#41 EwenBurban closed 1 year ago
2
new install instructions

#40 andrewkern closed 2 years ago
0
Pip pkg

#39 andrewkern closed 2 years ago
17
Please document dependency version requirements.

#38 molpopgen opened 3 years ago
13
Update diploSHIC.py

#37 andrewkern closed 3 years ago
0
testing file input size not equal to preds output size

#36 stsmall closed 3 years ago
3
Update Snakefile

#35 andrewkern closed 3 years ago
0
Example work flow required huge amount of RAM

#34 molpopgen closed 3 years ago
3
Warnings when using test data

#33 Axolotl233 closed 3 years ago
5
fixed py3.8 time bug

#32 jradrion closed 3 years ago
0
Python 3.8 not supported

#31 oushujun closed 3 years ago
4
Maybe update your readme - because of new "kr-colab" name?

#30 jtxtina closed 3 years ago
0
haploid mode without ancestor allele

#29 Yiguan opened 4 years ago
0
diplo_ZnS

#28 attrna closed 4 years ago
1
Encountering the problem of too few SNPs

#27 jtxtina closed 4 years ago
6
error when using fvecVcf

#26 ghost closed 4 years ago
2
Empty output in predict mode

#25 hkchi closed 4 years ago
3
`DataFrame` has no attribute `as_matrix()`

#24 nspope closed 2 years ago
1
Weights not written for trained model

#23 nspope closed 2 years ago
2
What could be compared against for prediction result?

#22 jtxtina closed 4 years ago
9
Assert input positions are in [0, 1) for ms format. Fixes #20.

#21 molpopgen closed 5 years ago
1
Sensitivity to mutation positions for "ms" format data

#20 molpopgen closed 5 years ago
0
TypeError: rogers_huff_r() got an unexpected keyword argument 'fill'

#19 yunusbb closed 5 years ago
1
Hard and Soft sweeps are similar?

#18 SBNoor closed 5 years ago
8
Error when making sweep training Windows

#17 SBNoor closed 5 years ago
4
getMinButNonZeroExamples error when making balanced training sets

#16 SBNoor closed 5 years ago
0
Getting an exception when making balanced training sets

#15 SBNoor closed 5 years ago
0
ModuleNotFoundError: No module named 'shicstats'

#14 SBNoor closed 5 years ago
4
nan reported for prob

#13 stsmall closed 5 years ago
8
ImportError: No module named google.protobuf

#12 Murukarthick closed 5 years ago
0
minor bugs correction

#11 mufernando closed 5 years ago
0
Suggestions to improve training accuracy?

#10 oushujun closed 5 years ago
2
ValueError: too many values to unpack (expected 2)

#9 oushujun closed 5 years ago
10
add example files for how to split up the simulation jobs

#8 molpopgen closed 5 years ago
0