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kraemer-lab / DART-Pipeline

Data analysis pipeline for the Dengue Advanced Readiness Tools (DART) project
https://dart-pipeline.readthedocs.io
MIT License
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epidemiological/dengue/peru #130

Open rowannicholls opened 2 weeks ago

rowannicholls commented 2 weeks ago

Edits related to the epidemiological/dengue/peru sub-pipeline

Commands:

uv run dart-pipeline get epidemiological/dengue/peru
uv run dart-pipeline process epidemiological/dengue/peru l=INFO
uv run dart-pipeline process epidemiological/dengue/peru l=INFO plots
uv run dart-pipeline process epidemiological/dengue/peru a=1 l=INFO
uv run dart-pipeline process epidemiological/dengue/peru a=1 l=INFO plots

Run times:

time uv run dart-pipeline get epidemiological/dengue/peru
21m31.33s
time uv run dart-pipeline process epidemiological/dengue/peru l=INFO
0.897s
time uv run dart-pipeline process epidemiological/dengue/peru l=INFO plots
1.282s
time uv run dart-pipeline process epidemiological/dengue/peru a=1 l=INFO
1.149s
time uv run dart-pipeline process epidemiological/dengue/peru a=1 l=INFO plots
3.109s

Functions:

def ministerio_de_salud_peru_data() -> list[DataFile]:
def process_dengueperu(

Tests:

def test_ministerio_de_salud_peru_data(
def test_process_dengueperu(