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kreshuklab / plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images
https://kreshuklab.github.io/plant-seg/
MIT License
99 stars 31 forks source link

Fix and integrate lifted multicut widget into agglomeration widget #328

Closed qin-yu closed 2 months ago

qin-yu commented 2 months ago

This PR fixes the semantic type and data type errors for lifted multicut, and integrate it into agglomeration widget:

GASP:

image

LMC:

image

codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 43.75000% with 9 lines in your changes missing coverage. Please review.

Project coverage is 65.50%. Comparing base (18865ff) to head (053b121). Report is 8 commits behind head on qy/plantsegv2.

Files with missing lines Patch % Lines
plantseg/viewer_napari/widgets/segmentation.py 45.45% 6 Missing :warning:
plantseg/functionals/segmentation/segmentation.py 0.00% 2 Missing :warning:
plantseg/tasks/segmentation_tasks.py 0.00% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## qy/plantsegv2 #328 +/- ## ================================================= - Coverage 65.54% 65.50% -0.05% ================================================= Files 67 67 Lines 4685 4688 +3 ================================================= Hits 3071 3071 - Misses 1614 1617 +3 ```

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