kstreet13 scry issues - Githubissues

kstreet13 / scry

Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).

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No genes names when computing devianceFeatureSelection() with batch

#25 Alexis-Varin opened 4 months ago
2
Merge celltype branch to master?

#24 willtownes closed 7 months ago
2
bigdata vignette not compiling

#23 willtownes closed 7 months ago
2
Cleaning up old branches

#22 willtownes closed 7 months ago
7
fixed sparse to dense conversion caused by matrix division

#21 eweine closed 7 months ago
3
Support for large matrices

#20 t-nol closed 7 months ago
2
Build error from Bioconductor

#19 willtownes closed 1 year ago
2
`NaN` gene deviance scores

#18 kstreet13 closed 2 years ago
1
Stability issues and warnings in 10x Genomics Visium data

#17 lmweber opened 2 years ago
4
more than one "batch"

#16 hongruhu closed 3 years ago
2
Experiences with the book, round 2

#15 LTLA opened 4 years ago
9
Negative binomial null residuals

#14 willtownes opened 4 years ago
0
Including covariates with nullResiduals()

#13 johnchamberlin opened 4 years ago
4
Deviance feature selection- increase speed

#12 willtownes closed 4 years ago
3
Benchmark scry using in-memory vs `DelayedArray` objects

#11 stephaniehicks opened 4 years ago
0
Revert "starting benchmark vignette for DA objects"

#10 willtownes closed 4 years ago
1
cache sizeFactors in SingleCellExperiment slot

#9 willtownes opened 4 years ago
2
starting benchmark vignette for DA objects

#8 stephaniehicks closed 4 years ago
0
Experiences from trying to get GLMPCA to run with the book

#7 LTLA opened 4 years ago
11
Null residuals with HDF5/DelayedArray/Matrix matrices

#6 drisso opened 4 years ago
4
Assay should default to `counts` in `SummarizedExperiment` objects

#5 drisso opened 4 years ago
1
Update the URL field on the bioc package page

#4 willtownes closed 4 years ago
1
Store GLM-PCA factors as LinearEmbeddingMatrix in SingleCellExperiment

#3 willtownes opened 4 years ago
2
Automated tests for batch effect adjustment

#2 willtownes opened 4 years ago
0
Documentation: SingleCellExperiment functionality

#1 willtownes opened 4 years ago
0