This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.
BSD 3-Clause "New" or "Revised" License
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Use latest version of SPP. Don't create tagAlign files for BAMs, SPP can read them directly. #11
Seeing some issues, will check and resubmit.