Citing fastqt

[dridk]

I just found a tool "jellyfish" which return bibtex citation from the command line : Would be greeate for fastqt too

➜  bin jellyfish cite -b 
@article{Jellyfish2010,
         author = {Mar\c{c}ais, Guillaume and Kingsford, Carl},
         title = {A fast, lock-free approach for efficient parallel counting of occurrences of k-mers},
         volume = {27},
         number = {6},
         pages = {764-770},
         year = {2011},
         doi = {10.1093/bioinformatics/btr011},
         URL = {http://bioinformatics.oxfordjournals.org/content/27/6/764.abstract},
         eprint = {http://bioinformatics.oxfordjournals.org/content/27/6/764.full.pdf+html},
         journal = {Bioinformatics}
}
➜  bin 

[natir]

I propose

@misc{FastQt,
              author = {Labsquare Team et al},
              title = {FastQt: a quality control tool for high throughput sequence data.},
              year = {2017},
              publisher = {GitHub},
              journal = {GitHub repository},
              howpublished = {\url{https://github.com/labsquare/fastQt}},
}

based on : https://academia.stackexchange.com/questions/14010/how-do-you-cite-a-github-repository/14015#14015

[dridk]

Agree :+1:

[StuntsPT]

I would recommend getting a DOI from Zenodo. It will generate a new DOI for each new version of the software that gets released on github.

[natir]

This commit solve a partially of this issue 60e415045d, I add a command line option to fully closed this issue.