search

labsyspharm / scimap

Spatial Single-Cell Analysis Toolkit
https://scimap.xyz/
MIT License
72 stars 24 forks source link

kernel keep dying #112

Open jianxinwang opened 1 month ago

jianxinwang commented 1 month ago

I'm trying to run a tutorial, however, I get kernel dying problem whenever I run is command:

%gui qt

And also this code blocks:

sm.pl.image_viewer(image_path=image_path, adata=adata, overlay='leiden_phenotype', point_size=10, point_color='white')

It also generated these lines for warnings: WARNING: From 6.5.0, xcb-cursor0 or libxcb-cursor0 is needed to load the Qt xcb platform plugin. WARNING: Could not load the Qt platform plugin "xcb" in "" even though it was found.

How can I get around this problem?

Thanks!

ajitjohnson commented 1 month ago

it is likely due to the computer system that you are using. What are you running it on?

jianxinwang commented 1 month ago

I tried RHEL8 and Ubuntu.

Thanks!

On Fri, Aug 9, 2024 at 3:43 PM Ajit Johnson Nirmal @.***> wrote:

it is likely due to the computer system that you are using. What are you running it on?

— Reply to this email directly, view it on GitHub https://github.com/labsyspharm/scimap/issues/112#issuecomment-2278630127, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACX6JW4ATC3NIE3LWR3VQWDZQULWXAVCNFSM6AAAAABMI7X7ISVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDENZYGYZTAMJSG4 . You are receiving this because you authored the thread.Message ID: @.***>

ajitjohnson commented 1 month ago

Is this via a HPC? Does it have a GUI component?

Could you try Windows or macOS!