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lassoan / SlicerMONAIAuto3DSeg

Extension for 3D Slicer for running MONAI Auto3DSeg models
MIT License
67 stars 10 forks source link

ITK error #24

Closed mauigna06 closed 9 months ago

mauigna06 commented 9 months ago

Testing this extension with 3 different CBCTs, the following errors occurred on the first two:

Screenshot from 2024-02-27 09-09-12

Screenshot from 2024-02-27 09-13-49

I think the problem may be related to fact that the vectors of the ijk2ras matrix are not orthonormal

Screenshot from 2024-02-27 10-08-33

This comment looked as the exact solution (but it did not work): https://github.com/wasserth/TotalSegmentator/blob/master/README.md#typical-problems

@lassoan :)

lassoan commented 9 months ago

We should just get rid of NIFTI and save as NRRD instead.