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lawremi / ggbio

Grid and ggplot2 based visualization for biological data
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autopilot yielding errors with new ggplot #65

Closed vnaranbhai closed 8 years ago

vnaranbhai commented 8 years ago

Running Ideogram(genome = "hg19")+xlim(generange) yields the following error: 1: axis.ticks.margin is deprecated. Please set margin property of axis.text instead

Previously this function worked fine and I surmise from reading posts regarding other packages that this may be because the rewrite of ggplot2 last year has changed the way margins are specified. Addition of a command such as + theme(axis.text.x = element_text(margin=margin(5,5,10,5,"pt")),axis.text.y = element_text(margin=margin(5,5,10,5,"pt"))) to the above command doesn't solve the problem so does thethe code within the plotting function in ggbio itself need to be updated?

lawremi commented 8 years ago

Should be fixed in Bioc svn (1.19.7).