leelasd / ligpargen

A repository for tutorials and FAQ's about LigParGen
http://traken.chem.yale.edu/ligpargen/
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Unable to generate .top and .rtf files for BNZ.pdb file #45

Open draskot opened 5 years ago

draskot commented 5 years ago

Issue Information

Software name & Version : Method:

Expected Behavior

Dear, trying to obtain .top and .gro files from BNZ.pdb, however steadily receive an error message: Sorry, an error has been detected in your input data (file, smile or selected charge): Found residue ligand BNZ Unknown error. Please, check the input file. If you are not able to find the error, we suggests to use the SMILE code

However, when I rename the same file (for example to X.pdb or to some other name) and upload to server, everything works as expected. For your convenience please find BNZ.pdb file (attached as BNZ.pdb.txt because GitHub does not support pdb file type).

Regards, Dr. Drasko Tomic BNZ.pdb.txt

Actual Behavior