CDCFrontier.gnm2.ann1.9M1L lacks mrna FASTA

legumeinfo / datastore-issues

mostly for issues pertaining to the content of the legumeinfo datastore; may also relate to characteristics of its user interface or managing the mirroring process to the legfed instance

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CDCFrontier.gnm2.ann1.9M1L lacks mrna FASTA #118

Closed sammyjava closed 2 years ago

sammyjava commented 2 years ago

Validating cicar collection CDCFrontier.gnm2.ann1.9M1L

cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.gff3.gz 14:04:55 [main] INFO org.biojava.nbio.genome.parsers.gff.GFF3Reader - Reading: /tmp/temp.gff3
cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz
cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz
cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz
cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz
INVALID: Neither mrna.fna.gz nor mrna_primary.fna.gz file is present.

adf-ncgr commented 2 years ago

derived with gffread

legumeinfo / datastore-issues

CDCFrontier.gnm2.ann1.9M1L lacks mrna FASTA #118

Validating cicar collection CDCFrontier.gnm2.ann1.9M1L

INVALID: Neither mrna.fna.gz nor mrna_primary.fna.gz file is present.