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legumeinfo / datastore-specifications

Specifications for directory naming, file naming, file contents in the LIS datastore
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Specify /repeats/ collections #3

Open adf-ncgr opened 3 years ago

adf-ncgr commented 3 years ago

will probably be simple, but at this point it's not even an officially sanctioned folder!

sammyjava commented 2 years ago

Note they exist under /species/ as well as under /GENUS/.

Arachis/cardenasii/repeats
└── K10017.rpt.931Q
    ├── araca.K10017.rpt.931Q.repeats.fna.gz
    ├── CHANGES.K10017.rpt.931Q.txt
    ├── MANIFEST.K10017.rpt.931Q.correspondence.yml
    ├── MANIFEST.K10017.rpt.931Q.descriptions.yml
    ├── README.K10017.rpt.931Q.yml
    └── usage_policy.txt
Arachis/GENUS/repeats
├── mixed.rpt.SHSZ
│   ├── arasp.mixed.rpt.SHSZ.repeats_AA011416.fna.gz
│   ├── CHANGES.mixed.rpt.SHSZ.txt
│   ├── CHECKSUM.mixed.rpt.SHSZ.md5
│   ├── MANIFEST.mixed.rpt.SHSZ.correspondence.yml
│   ├── MANIFEST.mixed.rpt.SHSZ.descriptions.yml
│   └── README.mixed.rpt.SHSZ.yml
└── mixed.rpt.XJGZ
    ├── arasp.mixed.rpt.XJGZ.repeats_MITE1.fna.gz
    ├── CHANGES.mixed.rpt.XJGZ.txt
    ├── CHECKSUM.mixed.rpt.XJGZ.md5
    ├── MANIFEST.mixed.rpt.XJGZ.correspondence.yml
    ├── MANIFEST.mixed.rpt.XJGZ.descriptions.yml
    └── README.mixed.rpt.XJGZ.yml
Arachis/hypogaea/repeats
└── Tifrunner.rpt.GZZS
    ├── arahy.Tifrunner.rpt.GZZS.repeats.fna.gz
    ├── CHANGES.Tifrunner.rpt.GZZS.txt
    ├── MANIFEST.Tifrunner.rpt.GZZS.correspondence.yml
    ├── MANIFEST.Tifrunner.rpt.GZZS.descriptions.yml
    └── README.Tifrunner.rpt.GZZS.yml