sthawinke
commented
1 month ago Hi, thanks for providing code and data. I'd also be interested in the code for cross-modality alignment, could you upload it to the repo too?
Open DHUXU opened 6 months ago
sthawinke
commented
1 month ago Hi, thanks for providing code and data. I'd also be interested in the code for cross-modality alignment, could you upload it to the repo too?
Hi, @leihouyeung. hope this message finds you well. I apologize for any inconvenience, but I am having some difficulty understanding the alignment of cross-platform and cross-modality data discussed in your paper. In the cross-platform section, how did you use RCTD to perform deconvolution on the Visium data to obtain cell type labels? Could you provide the code for this part? Additionally, in the cross-modality section, I am unsure which RNA corresponds specifically to the stereo-seq data link you provided. Could you help clarify this for me? I would be immensely grateful if you could answer the above questions. Thank you very much!