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lfaino / LoReAn

Long Reads Annotation pipeline
MIT License
71 stars 10 forks source link

Running LoReAn via docker failed #45

Closed LarsGab closed 2 years ago

LarsGab commented 2 years ago

Dear developers,

I'm trying to run LoReAn via docker. The run failed because the program wants to link my BAM file to a location that doesn't exist.

I read that this error can occur when two files on different filesystems are linked. This is not the case here: /data/ and /home/larsgabriel/ are on the same system.

Did I execute LoReAn correctly? The docker file should be up to date since I loaded it today.

Thank you for your help! Best, Lars

LarsGab commented 2 years ago

I found the problem, I mounted (docker -v option) the Augustus config directory to the wrong path.