bwa alignment of Nanopro sequences to call the transposable elements (TEs)

lh3 / bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

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bwa alignment of Nanopro sequences to call the transposable elements (TEs) #420

Open Anees-caas opened 5 months ago

Anees-caas commented 5 months ago

Hi, I am trying to align the long reads (Nanopro) to the reference genome after the alignment my purpose is to use the alignment Bams for identification of transposable elements. my query: what algorithms should I set? considering the mentioned aim.