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lh3
/
minigraph
Sequence-to-graph mapper and graph generator
https://lh3.github.io/minigraph
MIT License
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minigraph -cxasm --call -t16 graph.gfa sample-asm.fa > sample.bed
#117
jiangwenhao3001
closed
1 week ago
1
An error occurred when the sample.gfa file was generated
#116
jiangwenhao3001
closed
2 weeks ago
1
Low accuracy on simulated reads and overlapping primary alignments
#115
xchang1
opened
1 month ago
3
Add SN tag (or equivalent) for L lines
#114
hugocarmaga
opened
1 month ago
0
Node with no coverage (dc) on its own rank
#113
jp-jong
opened
4 months ago
0
problem converting merged bed to vcf
#112
ataulhaleem
closed
7 months ago
6
Graph construction methods
#111
tanakash1028
closed
8 months ago
2
Illegal instruction
#110
Mar10L
opened
8 months ago
2
feature requests for output VCF
#109
zeeev
opened
9 months ago
1
description of `gfatools view -l` file
#108
zeeev
closed
9 months ago
2
multiple mapping
#107
yjk-bertrand
closed
10 months ago
1
Base-level alignments with -c -- comparison to MC
#106
adadiehl
closed
9 months ago
2
Path/allele were could not be traced
#105
mekkiboussaha
closed
7 months ago
3
minigraph - stable fa - shot sequences
#104
bioteksampath
opened
1 year ago
0
Valid paths in a GFA don't have end-to-end alignments
#103
rlorigro
opened
1 year ago
1
comparing --call output bed files with gfa file
#102
suyeonwy
opened
1 year ago
0
0 reads mapped to graph
#101
jamesdalg
closed
1 year ago
3
Masking regions for chaining?
#100
rlorigro
opened
1 year ago
0
Update Zenodo link from Version 2 to Version 3 in README.md
#99
kojix2
closed
1 year ago
1
running minigraph
#98
Gon1976
opened
1 year ago
1
Re-arrange Readme
#97
Juke34
opened
1 year ago
0
final link failed: Nonrepresentable section on output
#96
jingydz
opened
1 year ago
0
Handling of read errors in input sequences
#95
AndreaNathansen
closed
1 year ago
1
some warnings while generating a genome graph
#94
hxt163
opened
1 year ago
0
Empty alignment gaf output
#93
abanerjee10
opened
1 year ago
4
Incorrect path alignment
#91
tobiasrausch
opened
1 year ago
0
size difference when reciprocal minigraphing
#90
cistarsa
opened
1 year ago
0
Classification of structural variants
#89
ValentinaPeona
opened
1 year ago
0
Annotation of rGFA
#88
gsc74
opened
1 year ago
0
CIGAR string inconsistency between GAF files produced with and without --vc flag
#87
samarendra-pani
closed
1 year ago
1
Mappings not full-length, alignment extension problem?
#86
tobiasrausch
opened
1 year ago
0
Comparing minigraph and Dipcall
#85
cjain7
opened
1 year ago
1
problem to build a genome with minigraph
#84
lingliao
closed
2 years ago
2
conversion to stableGaf incorrectly assigns forward orientation
#83
tobiasrausch
opened
2 years ago
1
sequence to graph mapping didn't work neither
#82
lingliao
opened
2 years ago
1
Segmentation fault (core dumped) while generaing a genome graph
#81
lingliao
opened
2 years ago
4
bridge_shortk: Assertion n_pathv > 0 failed
#80
tobiasrausch
closed
2 years ago
1
bridge_lchains: Assertion k < l1->cnt failed
#79
tobiasrausch
closed
2 years ago
1
bridge_lchains assertion error
#78
tobiasrausch
closed
2 years ago
2
add P-line generating path cmd
#77
ASLeonard
opened
2 years ago
0
Assertion failure when mapping barley genome
#76
glennhickey
closed
2 years ago
5
Issues with minigraph-cactus for inversion
#75
ZoeYang2020
closed
2 years ago
0
How does minigraph estimate per-base sequence divergence?
#74
hgibling
closed
2 years ago
1
minigraph and minimap2 alignment
#73
8banzhuan
opened
2 years ago
1
Problem when simulate a simple graph
#72
slbai01
opened
2 years ago
0
Evaluation criteria for read mappings to rGFA.
#71
gsc74
closed
2 years ago
2
Alignment information in minigraph
#70
8banzhuan
closed
2 years ago
1
Large (Mb-scale) SVs
#69
yuliamostovoy
opened
2 years ago
0
Translocation not found by minigraph
#68
VLoegler
closed
2 years ago
1
Bacterial pangenome?
#67
schorlton
closed
2 years ago
2
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