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lh3 / minigraph

Sequence-to-graph mapper and graph generator
https://lh3.github.io/minigraph
MIT License
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minigraph -cxasm --call -t16 graph.gfa sample-asm.fa > sample.bed #117

Closed jiangwenhao3001 closed 1 week ago

jiangwenhao3001 commented 1 week ago

The format of the sample.ded file is as follows chr00 7937794 7938008 >s1 >s3 >s2:214:+:chrM2:105523:105744 chr00 8030470 8030529 >s3 >s5 >s4:59:+:chrM2:31524:31594 chr001 7625 7747 >s6 >s8 >s7:122:+:chr01:9105:9227 chr001 20277 20277 >s8 >s9 :0:+:chr01:21752:21766 I would like to ask about the meaning of the fourth and fifth columns and the meaning of the beginning of the last column

lh3 commented 1 week ago

That is the path in the bubble corresponding to the sample. * for a zero-length path, effectively a deletion.