Hi,
I tried the minigraph-cactus pipeline for simulated genomes, which contains SNPs, indels and inversions.
It seems the alignment for the some inverted region not working as expected.
Is there any way that we tell cactus to better align those regions?
Hi, I tried the minigraph-cactus pipeline for simulated genomes, which contains SNPs, indels and inversions. It seems the alignment for the some inverted region not working as expected. Is there any way that we tell cactus to better align those regions?