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lh3 / minigraph

Sequence-to-graph mapper and graph generator
https://lh3.github.io/minigraph
MIT License
419 stars 38 forks source link

Handling of read errors in input sequences #95

Closed AndreaNathansen closed 1 year ago

AndreaNathansen commented 1 year ago

Hello,

I currently try to generate graphs from a number of sequences where some of them have read errors (e.g. snippets like "NNNNNNNNNNNNNNNNNNNNN"). Does minigraph handle those internally? If not, how should those sequences be preprocessed?

Thanks. Andrea

lh3 commented 1 year ago

Minigraph should work but results won't be ideal.