Is Hifi and Short Read Combined Counting Possible?

[mir-cat]

Hi! The question is basically in the title. I was wondering what the command might be if one would like to create a data base from both HiFi and Illumina short reads. Is there a way to merge two yak files after counting? Should they be input all together to the same yak count call?

[lh3]

Yes

yak count -o out.yak <(zcat *.fastq.gz) <(zcat *.fastq.gz)