lhilbert / EnhancerShoeBox

Molecular Dynamics Simulations of Enhancer-Promoter Interactions in a Model Shoe Box
MIT License
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Simulation conditions: Control, LatB etc. #10

Open ezingrebe opened 5 months ago

ezingrebe commented 5 months ago

Running the actin simulation via

python3 run_single_ACTIN_SMALL_BOX.py -b 11 -r 1 -t 10 -o actin/ -m 1 -c Control -p 3 -a 30 -x 80 -z 300

allows to parse "-c" argument, which describes the experimental conditions that can be mimicked in the simulation. Those are:

most of which are just various transcription inhibitors.

To be clarified: