Add additional commands for filtering in the plink process - Githubissues

lifebit-ai / gwas

GWAS pipeline using SAIGE

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Add additional commands for filtering in the plink process #1

Closed cgpu closed 4 years ago

cgpu commented 4 years ago

[x] Rename pre_gwas_filtering to gwas_filtering
[x] Add extra commands shown below to the process
[x] Expose thres_m, thres_HWE as nextflow parameters

https://github.com/lifebit-ai/gel-gwas/blob/1b267892e96b18d6c550de0f93c86b6c5fc387ee/main.nf#L64-L95