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linxingchen / cobra

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
MIT License
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Multi-bam as an input #48

Closed Andyargueasae closed 1 month ago

Andyargueasae commented 1 month ago

Hi, Just found that cobra doesn't accept multiple bam files as the input. So is cobra only applied to one sample at a time?

Cheers Yuhao from university of Melbourne

linxingchen commented 1 month ago

Hi Yuhao,

Yes, you are right that COBRA could work on only one sample each time, because it is based on the DBG assembly.

Best, Linxing

Andyargueasae commented 1 month ago

Alright, thanks.