Analyzing experiment LR-035B

Installation

Rstudio is required

Authors

Lisa Rodenburg

Running the code

Input data should be Excel data from organoid swelling assays where foldchange and AUC values are already calculated. Thid code can be used to make the graphs.

Acknowledgments

Sam Course wiring reproducible code

Requirements

Language: R 4.0.3

Operating system: Windows 10 x64

Packages: ggplot2_3.3.3
readxl_1.3.1
dplyr_1.0.4

Project organization

• PG = project-generated
• HW = human-writable
• RO = read only

  
  .
  ├── .gitignore
  ├── CITATION.md
  ├── LICENSE.md
  ├── README.md
  ├── requirements.txt
  ├── bin                <- Compiled and external code, ignored by git (PG)
  │   └── external       <- Any external source code, ignored by git (RO)
  ├── config             <- Configuration files (HW)
  ├── data               <- All project data, ignored by git
  │   ├── processed      <- The final, canonical data sets for modeling. (PG)
  │   ├── raw            <- The original, immutable data dump. (RO)
  │   └── temp           <- Intermediate data that has been transformed. (PG)
  ├── docs               <- Documentation notebook for users (HW)
  │   ├── manuscript     <- Manuscript source, e.g., LaTeX, Markdown, etc. (HW)
  │   └── reports        <- Other project reports and notebooks (e.g. Jupyter, .Rmd) (HW)
  ├── results
  │   ├── figures        <- Figures for the manuscript or reports (PG)
  │   └── output         <- Other output for the manuscript or reports (PG)
  └── src                <- Source code for this project (HW)

## License

This project is licensed under the terms of the [MIT License](/LICENSE.md)