lisiang / GREPore-seq

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KeyError: 'left_seqs' #4

Open diegusleik opened 1 year ago

diegusleik commented 1 year ago

Hi.

Congrats for this great development.

I'm trying to run the test files using the recommended command:

python ./greporeseq/greporeseq.py all -n ./test/N26chop.fastq.gz -r ./test/N26RefInfo.yaml -d ./test/N26DemultiplexInfo.yaml

, and I get KeyError: 'left_seqs'. Any advice??

[01/17 01:15:12PM][INFO][read_input] Successful loading "Downloads/GREPore-seq-master/test/N26RefInfo.yaml" [01/17 01:15:12PM][INFO][read_input] Successful loading "Downloads/GREPore-seq-master/test/N26DemultiplexInfo.yaml" [01/17 01:15:12PM][INFO][greporeseq] Making FASTA file [01/17 01:15:12PM][INFO][greporeseq] Disassembling input info Traceback (most recent call last): File "/home/sequencieitor/Downloads/GREPore-seq-master/greporeseq/greporeseq.py", line 371, in <module> main() File "/home/sequencieitor/Downloads/GREPore-seq-master/greporeseq/greporeseq.py", line 338, in main g.disassemble() File "/home/sequencieitor/Downloads/GREPore-seq-master/greporeseq/greporeseq.py", line 129, in disassemble self.left_seqs[f'{demuti_id}'] = self.reform_seq(demuti_info['left_seqs']) KeyError: 'left_seqs'

piailmitico commented 4 months ago

I also have the same issue. Have you solved? Any help? thanks