I'm trying to run the test files using the recommended command:
python ./greporeseq/greporeseq.py all -n ./test/N26chop.fastq.gz -r ./test/N26RefInfo.yaml -d ./test/N26DemultiplexInfo.yaml
, and I get KeyError: 'left_seqs'. Any advice??
[01/17 01:15:12PM][INFO][read_input] Successful loading "Downloads/GREPore-seq-master/test/N26RefInfo.yaml" [01/17 01:15:12PM][INFO][read_input] Successful loading "Downloads/GREPore-seq-master/test/N26DemultiplexInfo.yaml" [01/17 01:15:12PM][INFO][greporeseq] Making FASTA file [01/17 01:15:12PM][INFO][greporeseq] Disassembling input info Traceback (most recent call last): File "/home/sequencieitor/Downloads/GREPore-seq-master/greporeseq/greporeseq.py", line 371, in <module> main() File "/home/sequencieitor/Downloads/GREPore-seq-master/greporeseq/greporeseq.py", line 338, in main g.disassemble() File "/home/sequencieitor/Downloads/GREPore-seq-master/greporeseq/greporeseq.py", line 129, in disassemble self.left_seqs[f'{demuti_id}'] = self.reform_seq(demuti_info['left_seqs']) KeyError: 'left_seqs'
Hi.
Congrats for this great development.
I'm trying to run the test files using the recommended command:
python ./greporeseq/greporeseq.py all -n ./test/N26chop.fastq.gz -r ./test/N26RefInfo.yaml -d ./test/N26DemultiplexInfo.yaml
, and I get KeyError: 'left_seqs'. Any advice??
[01/17 01:15:12PM][INFO][read_input] Successful loading "Downloads/GREPore-seq-master/test/N26RefInfo.yaml" [01/17 01:15:12PM][INFO][read_input] Successful loading "Downloads/GREPore-seq-master/test/N26DemultiplexInfo.yaml" [01/17 01:15:12PM][INFO][greporeseq] Making FASTA file [01/17 01:15:12PM][INFO][greporeseq] Disassembling input info Traceback (most recent call last): File "/home/sequencieitor/Downloads/GREPore-seq-master/greporeseq/greporeseq.py", line 371, in <module> main() File "/home/sequencieitor/Downloads/GREPore-seq-master/greporeseq/greporeseq.py", line 338, in main g.disassemble() File "/home/sequencieitor/Downloads/GREPore-seq-master/greporeseq/greporeseq.py", line 129, in disassemble self.left_seqs[f'{demuti_id}'] = self.reform_seq(demuti_info['left_seqs']) KeyError: 'left_seqs'