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llrs / experDesign

Design experiments distributed in several batches
https://experDesign.llrs.dev
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Faulty assignation of samples #51

Closed llrs closed 6 months ago

llrs commented 6 months ago

There were two samples that the allocation was not correct. This is related to the data from #47 (Olink-NeuroEpiCas). In each plate (index 1) there were two samples to the same well.

It could be either spatial is faulty or inspect is faulty. I could manually resolve the issue by using position_name. The reason seems that plate 1 didn't use the well that was assigned to plate 2. And vice versa, so both plates ended up with problems.

Consider exporting position_name and add more internal checks of the output of spatial and inspect.

llrs commented 6 months ago

Also check and reorder the spatial index according to positions

llrs commented 6 months ago

position_name returns a factor with all the possible positions so that will help to sort them. The commit fixed the issue with the code and it is simpler and faster.