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lmiroslaw / azure-batch-ilastik

Running Ilastik on Azure Batch
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Original image needs to be present in batch processing #1

Open k-dominik opened 6 years ago

k-dominik commented 6 years ago

Heyo,

first of all: really nice project!

I have glanced over your code and the following lines caught my attention:

https://github.com/lmiroslaw/azure-batch-ilastik/blob/5cf3e826317ba895ee5234b91a3964d13ab4648f/run_task.sh#L15-L16

This might be related to the following ilastik issue: https://github.com/ilastik/ilastik/issues/1441

In short, your project has to see the data it was trained on. This is a bit unhandy (hence, the open issue in ilastik). The easiest way to achieve that is to copy the image file to the project file (via the dataset properties in the data selection applet. But after that you should be able to use images of the same dimensionality with it.

lmiroslaw commented 6 years ago

Thanks for your feedback!

This project will be presented during the Azure tutorial at Supercomputing Frontiers next week.

I will try out your suggestion asap.

k-dominik commented 6 years ago

Well, then good luck tomorrow! :)