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loosolab / UROPA

Universal RObust Peak Annotator
https://uropa-manual.readthedocs.io/
MIT License
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Summary feature distance inconsistency #2

Closed Hrovatin closed 2 years ago

Hrovatin commented 5 years ago

I have noticed that when I set the distance to, for example 1300,1400, my summary both of allhits and besthits contains distance graph only up to 350 bp distance. I have checked resulting bed files and pairs with distance above 350 bp are definitel reported. Could you exmplain me what is happening.

msbentsen commented 5 years ago

Hi Hrovatin, I discovered that we have previously set a "maximum distance" for these plots, meaning that your peak->feature hits were there in the results but were not shown in the plot. This probably only makes sense for very large distances, so I have removed this limit in UROPA 3.3.4 (on pypi but not in conda yet). Hope this helps you out!