The parent directory for read simulation and quantification directories is required to exist before running piquant.py commands. The stats directory specified for the analyse_runs command, however, is created if it doesn't exist. This should be made consistent.
The parent directory for read simulation and quantification directories is required to exist before running
piquant.py
commands. The stats directory specified for theanalyse_runs
command, however, is created if it doesn't exist. This should be made consistent.