It would be helpful to clarify the output that is expected to be seen at each stage. For example, when running "create_reads", all that will immediately be seen is messages from nohup indicating that execution of run_simulation.sh scripts has started (in the background).
It would be helpful to clarify the output that is expected to be seen at each stage. For example, when running "create_reads", all that will immediately be seen is messages from nohup indicating that execution of run_simulation.sh scripts has started (in the background).