batch information not loaded?

ma-compbio / Higashi

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph

MIT License

79 stars 10 forks source link

batch information not loaded? #13

Closed sshen82 closed 3 years ago

sshen82 commented 3 years ago

Hi Ruochi, I tried the new version of Higashi on the classical Lee et al. 2019 data, but find that the result still doesn't include the batch information. The zip file contains my json file and the pickle file. I think the batch is included clearly. Do you know what might be the error?

DataInfo.zip

Yours sincerely, Siqi Shen

ruochiz commented 3 years ago

Hi Siqi,

The JSON file looks good to me. I attach the JSON file I use when running this dataset for your reference. I'm now running the latest Higashi on the PFC dataset (with the JSON file I attached). Will send the results once I have them.

config_m3c_500Kb.JSON.zip