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ma-compbio / Higashi

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
MIT License
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config problem #54

Closed a1e-the closed 3 months ago

a1e-the commented 3 months ago

According to the config instruction page, there are two necessary keys named "genome_reference_path" and "cytoband_path", i wonder how i can get the respondding data(which file from uscs genome browser) if i try to run the tutorials ipynb.

a1e-the commented 3 months ago

https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/ for file hg19.chrom.sizes AND https://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/ for file cytoBand.txt