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ma-compbio / Higashi

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
MIT License
79 stars 10 forks source link

quick question #6

Closed tarak77 closed 3 years ago

tarak77 commented 3 years ago

Hey @ruochiz , So in the output embedding file {embedding_name}_0_origin.npy, the rows are the cells in the same ordering as the cell_id we give(say 0,1,2,....,#cell-1) to generate the data.txt file right??

ruochiz commented 3 years ago

Yes. You understanding is correct. BTW, my email is ruochiz@andrew.cmu.edu, if you prefer, I could answer questions or help debugging through email. 😄

tarak77 commented 3 years ago

Sounds good! I follow you on twitter to haha