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magicDGS / ReadTools

A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms
https://magicdgs.github.io/ReadTools/
MIT License
6 stars 3 forks source link

Improve help for cli calling removed tools #502

Closed magicDGS closed 5 years ago

magicDGS commented 5 years ago

Closes #488

codecov[bot] commented 5 years ago

Codecov Report

Merging #502 into master will increase coverage by 0.601%. The diff coverage is 100%.

Impacted file tree graph

@@               Coverage Diff               @@
##              master      #502       +/-   ##
===============================================
+ Coverage     92.956%   93.556%   +0.601%     
- Complexity      1056      1077       +21     
===============================================
  Files            102       103        +1     
  Lines           2825      2840       +15     
  Branches         301       302        +1     
===============================================
+ Hits            2626      2657       +31     
+ Misses           153       137       -16     
  Partials          46        46
Impacted Files Coverage Δ Complexity Δ
src/main/java/org/magicdgs/readtools/Main.java 84.848% <100%> (+3.03%) 15 <1> (+1) :arrow_up:
...icdgs/readtools/cmd/RTDeprecatedToolsRegistry.java 100% <100%> (ø) 5 <5> (?)
...adtools/cmd/programgroups/DistmapProgramGroup.java 100% <0%> (+100%) 3% <0%> (+3%) :arrow_up:
...eadtools/cmd/programgroups/MappedProgramGroup.java 100% <0%> (+100%) 3% <0%> (+3%) :arrow_up:
.../cmd/programgroups/RTManipulationProgramGroup.java 100% <0%> (+100%) 3% <0%> (+3%) :arrow_up:
...ls/cmd/programgroups/RTConversionProgramGroup.java 100% <0%> (+100%) 3% <0%> (+3%) :arrow_up:
...ls/cmd/programgroups/MappabiltityProgramGroup.java 100% <0%> (+100%) 3% <0%> (+3%) :arrow_up: