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magnusmanske / genedb_wd

An interface implementation for GeneDB using Wikidata
Apache License 2.0
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GeneDB is shown as source for GO terms with IEA evidence code. It should be InterPro. #13

Closed uliboehme closed 5 years ago

uliboehme commented 5 years ago

On a regular basis InterPro is being run in Chado. Based on InterPro domains GO terms are automatically assigned with the evidence code IEA .(http://wiki.geneontology.org/index.php/Inferred_from_Electronic_Annotation_(IEA))

IEA evidence codes should be linked to InterPro. Currently GeneDB is shown as source for these GO terms. The InterPro link is present in column 8 of the GAF file.

Here is an example with two GO terms with IEA evidence codes. https://tools.wmflabs.org/genedb/#/gene/PF3D7_0810800

This is how it is currently shown in GeneDB: screen shot 2019-01-07 at 08 05 50 http://www.genedb.org/gene/PF3D7_0810800

magnusmanske commented 5 years ago

Works now, example: https://www.genedb.org/#/gene/PF3D7_0810800 Items will be updated with the next run