Visualization error fix & code update

mahmoodlab / PANTHER

Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

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Closed andrewsong90 closed 2 months ago

andrewsong90 commented 2 months ago

The error in the output of panther_encoder.representation in visualization notebook fixed.
FAISS clustering error fixed: kmeans.train(patches.numpy()) => kmeans.train(patches[:n_patches].numpy())
Code cleaned up