Closed jychoilab closed 4 years ago
I don't think memory is the problem. Will you be able to share your sequences so that I can replicate the error?
Hi, I executed the following commands.
It ended with an error msg ! munmap_chunk(): invalid pointer: 0x0000001957d578b0 ***
OutFiles Generated: trans.txt, cm.txt, cords.txt(blank)
Can You Please help. Navajeet
Sorry somehow I missed this message. Hopefully you were able to find a solution. If there are any outstanding problems, I'll be happy to help. I am closing it for now.
Hello
I was interested in using svmu for my genome assembly of interest and I ran into a seg fault error. Could you take a look at this error? The genome assembly of my organism is a plant ~400Mbp but I hard masked my sample genome and hard masked my reference genome. The reference genome has 12 chromosomes but my sample genome is still a draft so it has ~2000 contigs. I initially thought the seg fault occured due to running out of memory so I just took one chromosome of the ref genome and used numcer to align all of the possible sample genome contigs. I'm running the commands on a server where I gave 140GB of memory and still ran into seg fault error.
Heres what I get with /usr/bin/time -v
And here's what I got from running
gdb
Thanks in advance for the help.
Jae