Advanced imputation metrics

[lynnjo]

Description

Added HapidSampleTable and SampleHapidByRange commands to aid with imputation analysis.

Type of change

What type of changes does your code introduce? Put an x in boxes that apply.

• [x] CHANGE (fix or feature that would cause existing functionality to not work as expected)
• [ ] FEATURE (non-breaking change which adds functionality)
• [ ] BUGFIX (non-breaking change which fixes an issue)
• [ ] ENHANCEMENT (non-breaking change which improves existing functionality)
• [ ] NONE (if none of the other choices apply. Example, tooling, build system, CI, docs, etc.)

Checklist:

• [x] I have performed a self-review of my code
• [x] I have commented my code, particularly in hard-to-understand areas
• [ ] I have updated relevant documentation

Changelog entry

Please add a one-line changelog entry below. This will be copied to the changelog file during the release process.

Added hapid-sample-table and sample-hapid-by-range commands to aid with imputation analysis.

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 89.39394% with 7 lines in your changes missing coverage. Please review.

Project coverage is 80.26%. Comparing base (bdbf697) to head (b57b15f). Report is 30 commits behind head on main.

Files with missing lines	Patch %	Lines
.../net/maizegenetics/phgv2/cli/SampleHapidByRange.kt	92.10%	1 Missing and 2 partials :warning:
src/main/kotlin/net/maizegenetics/phgv2/cli/Phg.kt	0.00%	2 Missing :warning:
...in/net/maizegenetics/phgv2/cli/HapidSampleTable.kt	95.83%	0 Missing and 1 partial :warning:
...n/kotlin/net/maizegenetics/phgv2/cli/MergeGVCFs.kt	50.00%	1 Missing :warning:

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #248 +/- ## ========================================== + Coverage 80.12% 80.26% +0.14% ========================================== Files 82 84 +2 Lines 5830 5893 +63 Branches 1024 1028 +4 ========================================== + Hits 4671 4730 +59 - Misses 782 783 +1 - Partials 377 380 +3 ```

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