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mal-boisestate / Immunostained_Image_Analysis

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Open Ben-Ben-M opened 1 year ago

Ben-Ben-M commented 1 year ago

Things to mention:

Need to update program on computers to fix bugs - remove_edge_cells on rectangular (non-square) imgs, and different naming convention in confocal imgs in mask channel ('DAPI' vs 'DAPI-T2')
10x DIC model creation; Comparison between manual mask and DAPI-produced mask models
Need to train new models for confocal imgs for all magnifications; Thresholding does decent job
Looking into necessity of stitched imgs - 63x magnification no longer necessary w/ confocal imgs

Ben-Ben-M commented 1 year ago

Additional questions/notices:

Questions about practical use of DIC masks - are these useful to people in the lab?
Waiting for comments on analysis output of new confocal imgs using the program