ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
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save partialcdr3 at the same dir where full cdr3 are saved #16
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smangul1 closed 7 years ago
for exampel if run
python /u/home/b/brigitta/code/imrep/imrep.py --fastq --extendedOutput /u/home/b/brigitta/scratch/dumsterDiving/fastq/A06.fastq /u/home/b/brigitta/scratch/dumsterDiving/rop3/A06/A06.cdr3
i want partial to be in /u/home/b/brigitta/scratch/dumsterDiving/rop3/A06/