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mapping-commons / mh_mapping_initiative

Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
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Review GXD mappings #2

Open matentzn opened 4 years ago

matentzn commented 4 years ago

http://www.informatics.jax.org/downloads/reports/MP_EMAPA.rpt

Terry H:

In 2017, I did a broad-scale mapping between MP, MA, EMAPA and Uberon terms, initially using the existing MA-EMAPA, Uberon-MA, Uberon-EMAPA and MP-Uberon associations already existing in the MA, Uberon and MP files. The goal of this effort was to created links from MP to EMAPA using Uberon, (http://www.informatics.jax.org/downloads/reports/MP_EMAPA.rpt) so the focus was on anatomical terms relevant to the MP. I submitted a list of several hundred terms, many of which had more recently been added to the EMAPA, to the Uberon group along with what I determined to be their Uberon mappings. I worked with Nicole Vasilevsky to have them added as xrefs.

there were many terms for which either the MP-Uberon or Uberon-EMAPA associations or both were not existing, I have made some efforts to address this, and to monitor updates, but not in a concerted way. Certainly my spreadsheets (which is what I used for the analysis) have not kept up with the status of all of the relevant ontologies.

2017: generated an alignment report for MP, Uberon, EMAPA and MA terms. (Note that there are 1:n and n:1 associations, as might be expected, especially for the phenotype terms.) It might be useful to have it rerun.