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marbl / SALSA

SALSA: A tool to scaffold long read assemblies with Hi-C data
MIT License
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update AGP #181

Closed skoren closed 6 months ago

skoren commented 6 months ago

Following AGP spec https://www.ncbi.nlm.nih.gov/genbank/genome_agp_specification/, switched gaps to unknown size which has to be 100bp and source as proximity ligation.