marcelauliano MitoHiFi issues

marcelauliano / MitoHiFi

Find, circularise and annotate mitogenome from PacBio assemblies

MIT License

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issues

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Update CI to build image automatically

#109 gq1 opened 1 day ago
1
Conda

#108 gq1 opened 2 days ago
0
NVM

#107 BTBarney opened 1 month ago
0
ValueError: max() arg is an empty sequence

#106 sandravelascoc opened 1 month ago
5
Unable to assemble a mitogenome: 'parsed_blast.txt' and 'parsed_blast_all.txt' files are empty.

#105 ddols opened 1 month ago
1
MitoHiFi cannot find FASTA file in the directory where it is being run

#104 Mpersicae closed 1 month ago
2
Contig "+ contig_id + " does not have an annotation file

#103 FallonMe opened 2 months ago
0
Error - can't makeblastdb

#102 desmodus1984 opened 2 months ago
2
why is there a duplicated sequence in all_potential_contigs.fa?

#101 ghost opened 2 months ago
1
libexec/lmod: No such file or directory

#100 ghost closed 2 months ago
0
The error (Duplicated sequence "ptg000001l_rc_rotated" in file "-") occured when i test MitoHiFI

#99 HydrOpOtesJA99 closed 3 months ago
1
Update Dockerfile

#98 sbassi opened 3 months ago
0
mitohifi error

#97 ghost closed 4 months ago
2
Quality assessment of mt genomes assembled using mitoHiFi

#96 aureliendejode closed 3 months ago
1
Singularity run does not seem to limit threads

#95 crcardenas opened 5 months ago
0
'Code' Dockerfile on master uses 'Base' Dockerfile from another older branch.

#94 vruano opened 5 months ago
0
Problems building base docker images from Dockerfile

#93 vruano opened 5 months ago
0
No MitoGenome from Closely Related Species Available from GenBank

#92 Ruiqi-CUB opened 6 months ago
0
No output after successfully running the pipeline

#91 Ruiqi-CUB opened 6 months ago
1
How to export data to specific document?

#90 badbadbat opened 6 months ago
0
Can find specific document outside /home/user with singularity

#89 badbadbat opened 6 months ago
0
[validation] How to arrange the mtDNA after assembly with mitoHiFi from hifiasm

#88 Isoris opened 6 months ago
2
UserWarning: Warning: representative contig wasn't circularized

#87 Qikiiso opened 7 months ago
0
meaning of parameter -a {animal,plant,fungi}

#86 ramiroricardo opened 8 months ago
0
Running MitoHiFi starting from reads vs contigs

#85 ramiroricardo opened 8 months ago
0
update getGenesList.py to support `gb` files without `gene` feature

#84 abueg opened 8 months ago
1
samtools view: failed to add PG line to the header

#83 Labarcena-Jessica closed 8 months ago
1
hifiasm assembly is creating a larger than expected contig

#82 Labarcena-Jessica closed 8 months ago
3
KeyError: 'gene'

#81 BushraYusufkhan closed 8 months ago
3
Running mitohifi using singularity

#80 aureliendejode opened 8 months ago
1
Potentially false large tandem duplication

#79 jacopoM28 opened 8 months ago
0
Updated mito reference script to accept the ncbi api key

#78 ksenia-krasheninnikova closed 8 months ago
0
different result with mito annotation

#77 tanpham15 opened 9 months ago
0
mitohifi adds second newline to input

#76 YanisChrys opened 9 months ago
1
problem with get_ref_tRNA

#75 AlcaArctica closed 9 months ago
4
ModuleNotFoundError: No module named 'parse_blast'

#74 AlcaArctica closed 9 months ago
2
docker pull error

#73 ivaneskos opened 9 months ago
0
mitogenome file has more than one sequence

#72 xuxiaodong111 closed 9 months ago
1
Error: Invalid literal for int() with base 16: b''

#71 mahesh-panchal opened 10 months ago
2
ValueError: max() arg is an empty sequence

#70 zhyx6511 closed 10 months ago
1
MitoFinder is not making annotation files when it says it did

#69 michaeljmetzger closed 10 months ago
3
samtools view: failed to add PG line to the header

#68 YanCheer closed 10 months ago
9
No rotated contigs found

#67 Yali1989 opened 11 months ago
2
AttributeError: 'Seq' object has no attribute 'defined'

#66 ramaniak opened 1 year ago
2
[makeblastdb]

#65 Isoris closed 1 year ago
2
Lighter weight container

#64 mahesh-panchal closed 11 months ago
4
`makeblastdb` output/error log is suppressed

#63 davidlougheed opened 1 year ago
0
Excessively long running time

#62 lslochov closed 10 months ago
3
error about tRNA-Phe information(".trnas")

#61 ZhengJinfang1220 closed 1 year ago
2
reference_tRNA = max(tRNAs, key=tRNAs.get) ValueError: max() arg is an empty sequence , even though mito finder is working properly

#60 mixle18 closed 1 year ago
8